[illumina_qc] Qualimap and samtools flagstats results are not used in MultiQC
In nextflow log file we found this warning
WARN: Failed to publish file: /work/sbsuser/data/NovaSeq/230210_A00318_0379_AH5NTFDSX5_Lane1_1676177113/nextflow/work/b3/b36751daa4fea4865a91fc9cb05048/17MAG964168_S84_L001_R2_001/css; to: /work/sbsuser/data/NovaSeq/230210_A00318_0379_AH5NTFDSX5_Lane1_1676177113/nextflow/A1P3-Sparse-Porc_DNAPrep-Mosquito-PLQ10_20230216100826/alignmentStats/qualimap/17MAG964168_S84_L001_R2_001/css [copy] -- See log file for details
And, result files are not send to the MultiQC process...