adding test
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- LICENSE 505 additions, 0 deletionsLICENSE
- README.md 40 additions, 18 deletionsREADME.md
- benchmarking/bench_BLR-RM-x-S2/workflow/scripts/updateChunkID.py 0 additions, 48 deletions...rking/bench_BLR-RM-x-S2/workflow/scripts/updateChunkID.py
- benchmarking/scripts/Align.py 0 additions, 0 deletionsbenchmarking/scripts/Align.py
- benchmarking/scripts/RMcat2align.py 104 additions, 1 deletionbenchmarking/scripts/RMcat2align.py
- benchmarking/scripts/RMcat2align.py 104 additions, 1 deletionbenchmarking/scripts/RMcat2align.py
- benchmarking/scripts/UpdateScoreOfMatches.py 75 additions, 1 deletionbenchmarking/scripts/UpdateScoreOfMatches.py
- benchmarking/scripts/UpdateScoreOfMatches.py 75 additions, 1 deletionbenchmarking/scripts/UpdateScoreOfMatches.py
- data/ABR2_337.fa.formated 0 additions, 0 deletionsdata/ABR2_337.fa.formated
- data/Bdis_TEannotGr_chr_allTEs_nr_noSSR_join_path.annotStatsPerTE_FullLengthCopy.fa 83089 additions, 0 deletions...lTEs_nr_noSSR_join_path.annotStatsPerTE_FullLengthCopy.fa
- data/Bdis_TEdenovoGr.fa 4519404 additions, 0 deletionsdata/Bdis_TEdenovoGr.fa
- envs/TEannot-snakemake-env.yaml 0 additions, 12 deletionsenvs/TEannot-snakemake-env.yaml
- panTEannot.png 0 additions, 0 deletionspanTEannot.png
- workflow/Snakefile 11 additions, 22 deletionsworkflow/Snakefile
- workflow/config/config.yaml 0 additions, 12 deletionsworkflow/config/config.yaml
- workflow/config/config_Atha_63acc.yaml 0 additions, 81 deletionsworkflow/config/config_Atha_63acc.yaml
- workflow/config/config_Bd.yaml 1 addition, 2 deletionsworkflow/config/config_Bd.yaml
- workflow/config/config_concatLibrary.yaml 0 additions, 76 deletionsworkflow/config/config_concatLibrary.yaml
- workflow/config/test.yaml 16 additions, 0 deletionsworkflow/config/test.yaml
- workflow/dag.pdf 0 additions, 0 deletionsworkflow/dag.pdf
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