- Mar 14, 2023
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Jules Sabban authored
Merge branch 'dev_Jules' into 'master' Fix issues and improvements from first release See merge request !3
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Jules Sabban authored
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Jules Sabban authored
Ref: #41
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Jules Sabban authored
Ref: #113
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Jules Sabban authored
Ref: #41
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- Mar 09, 2023
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Jules Sabban authored
Ref: #20
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- Mar 07, 2023
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Jules Sabban authored
Ref: #20
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- Mar 03, 2023
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Jules Sabban authored
- catch specific output files - Improve output files name Ref: #41
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Jules Sabban authored
Ref: #41
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Jules Sabban authored
Ref: #42
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- Mar 02, 2023
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Jules Sabban authored
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Jules Sabban authored
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Jules Sabban authored
- New sub-workflow for RNA QC against transcriptomic reference and dependencies - Add salmon in multiqc Ref: #19
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- Feb 28, 2023
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Jules Sabban authored
- change glob pattern to discover files in subdirectories if they exist Ref: #39
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Jules Sabban authored
- Avoid empty data.frame printing - Improve void data.frame detection - Improve log message in error case Ref: #38
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- Feb 27, 2023
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Jules Sabban authored
- Auto detect machine name - Regex depending on machine name Ref: #37
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- Feb 24, 2023
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Jules Sabban authored
- adapt subworkflow and module using bwa Ref: #36
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Jules Sabban authored
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Jules Sabban authored
- this process is replace by one in module_dna.nf
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Jules Sabban authored
- add reference genome name in SAM and log name
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Jules Sabban authored
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Jules Sabban authored
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Jules Sabban authored
- new version - increase memory
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Jules Sabban authored
Ref: #30
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- Feb 23, 2023
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Jules Sabban authored
Ref: #32
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Jules Sabban authored
Ref: #33
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- Feb 21, 2023
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Jules Sabban authored
Ref: #34
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Jules Sabban authored
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Jules Sabban authored
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Jules Sabban authored
- Move withLabel config to test and prod files - remove unused withLabel in base.conf file Ref: #34
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Jules Sabban authored
- change configuration selctor (withName -> withLabel) - add label scope in the process Ref: #34
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- Feb 20, 2023
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Jules Sabban authored
- Improve NovaSeq data detection using regex - Move process configuration in base config file - Increase informatic ressources Ref : #31
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- Feb 10, 2023
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Jules Sabban authored
First deployed version See merge request !2
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Jules Sabban authored
- CamelCase -> snake_case - Add new params file template Ref: #29
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Jules Sabban authored
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- Feb 08, 2023
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Jules Sabban authored
- When project's name were not found in the SampleSeet, output file had no name.
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- Feb 06, 2023
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Jules Sabban authored
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Jules Sabban authored
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Jules Sabban authored
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Jules Sabban authored
- Create utils functions - Create email templates - Send email at start - Send email at end - Correct manifest values - Create summary map
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